OCA Atlas for 5KYA

5KYA

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

6Y4

enzyme

Gene
Ontology

Chain	Function	Process	Component
E, A
F, B

Primary reference

Brain penetrant liver X receptor (LXR) modulators based on a 2,4,5,6-tetrahydropyrrolo[3,4-c]pyrazole core., Tice CM, Noto PB, Fan KY, Zhao W, Lotesta SD, Dong C, Marcus AP, Zheng YJ, Chen G, Wu Z, Van Orden R, Zhou J, Bukhtiyarov Y, Zhao Y, Lipinski K, Howard L, Guo J, Kandpal G, Meng S, Hardy A, Krosky P, Gregg RE, Leftheris K, McKeever BM, Singh SB, Lala D, McGeehan GM, Zhuang L, Claremon DA, Bioorg Med Chem Lett. 2016 Aug 29. pii: S0960-894X(16)30921-0. doi:, 10.1016/j.bmcl.2016.08.089. PMID:27599745

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]

Biological Unit Coordinates (5kya.pdb1.gz) 77 Kb

Biological Unit Coordinates (5kya.pdb2.gz) 77 Kb

LPC: Ligand-Protein Contacts for 5KYA

CSU: Contacts of Structural Units for 5KYA

Structure Factors (666 Kb)

Retrieve 5KYA in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5KYA from S2C, [Save to disk]

Re-refined 5kya structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KYA in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kya_B] [5kya] [5kya_A] [5kya_E] [5kya_F]

SWISS-PROT database:

Domain found in 5KYA: [HOLI ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]