5L3W Protein Transport date May 24, 2016
title Structure Of The Crenarchaeal Ftsy Gtpase Bound To Gdp
authors G.Bange, K.Wild, I.Sinning
compound source
Molecule: Signal Recognition Particle Receptor Ftsy
Chain: A
Fragment: Ng Domain, Unp Residues 69-368
Synonym: Srp Receptor
Engineered: Yes
 Organism_scientific: Sulfolobus Acidocaldarius
Organism_taxid: 2285
Gene: Ftsy, Aty89_10730, Atz20_02285
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3
R_factor 0.171 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
144.906 144.906 49.723 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand GDP, SO4 enzyme
Gene ATY89 ; ATZ20
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for Conserved Regulation and Adaptation of the Signal Recognition Particle Targeting Complex., Wild K, Bange G, Motiejunas D, Kribelbauer J, Hendricks A, Segnitz B, Wade RC, Sinning I, J Mol Biol. 2016 May 27. pii: S0022-2836(16)30184-X. doi:, 10.1016/j.jmb.2016.05.015. PMID:27241309
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (5l3w.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 5L3W
  • CSU: Contacts of Structural Units for 5L3W
  • Structure Factors (255 Kb)
  • Retrieve 5L3W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L3W from S2C, [Save to disk]
  • Re-refined 5l3w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5L3W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5L3W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l3w] [5l3w_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5L3W: [AAA] [SRP54] [SRP54_N ] by SMART
    • Other resources with information on 5L3W
  • Community annotation for 5L3W at PDBWiki (http://pdbwiki.org)

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