5LCN Hydrolase date Jun 22, 2016
title Structure Of The Pyrococcus Furiosus Esterase Pf2001 With Sp P212121
authors N.Varejao, D.Reverter
compound source
Molecule: Uncharacterized Protein
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Pyrococcus Furiosus (Strain Atcc 43587 3638 Jcm 8422 Vc1);
Organism_taxid: 186497
Strain: Atcc 43587 Dsm 3638 Jcm 8422 Vc1
Gene: Pf2001
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.495 99.440 146.049 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand 1PE enzyme
Primary referenceStructural Mechanism for the Temperature-Dependent Activation of the Hyperthermophilic Pf2001 Esterase., Varejao N, De-Andrade RA, Almeida RV, Anobom CD, Foguel D, Reverter D, Structure. 2017 Dec 28. pii: S0969-2126(17)30403-3. doi:, 10.1016/j.str.2017.12.004. PMID:29307486
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (5lcn.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (5lcn.pdb2.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 5LCN
  • CSU: Contacts of Structural Units for 5LCN
  • Structure Factors (867 Kb)
  • Retrieve 5LCN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LCN from S2C, [Save to disk]
  • Re-refined 5lcn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LCN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LCN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lcn_D] [5lcn_C] [5lcn_B] [5lcn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LCN
  • Community annotation for 5LCN at PDBWiki (http://pdbwiki.org)

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