5LK8 Virus date Jul 21, 2016
title Single Particle Reconstruction Of Slow Bee Paralysis Virus E Particle
authors S.Kalynych, T.Fuzik, P.Plevka
compound source
Molecule: Vp1
Chain: A
 Organism_scientific: Slow Bee Paralysis Virus
Organism_taxid: 458132

Molecule: Vp2
Chain: B
Organism_scientific: Slow Bee Paralysis Virus
Organism_taxid: 458132

Molecule: Vp3
Chain: C
Organism_scientific: Slow Bee Paralysis Virus
Organism_taxid: 458132
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.42 Å
Gene
Ontology
ChainFunctionProcessComponent
C, B


Primary referenceCryo-EM study of slow bee paralysis virus at low pH reveals iflavirus genome release mechanism., Kalynych S, Fuzik T, Pridal A, de Miranda J, Plevka P, Proc Natl Acad Sci U S A. 2017 Jan 4. pii: 201616562. doi:, 10.1073/pnas.1616562114. PMID:28053231
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (5lk8.pdb1.gz) 6543 Kb
  • CSU: Contacts of Structural Units for 5LK8
  • Retrieve 5LK8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LK8 from S2C, [Save to disk]
    • View 5LK8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LK8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lk8_C] [5lk8_A] [5lk8_B] [5lk8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LK8
  • Community annotation for 5LK8 at PDBWiki (http://pdbwiki.org)

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