OCA Atlas for 5LUP

5LUP

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

K, PO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
J, C, I, D, G, B, K, A, H, F, E, L

Primary reference

A Helical Bundle in the N-terminal Domain of the BLM Helicase Mediates Dimer and Potentially Hexamer Formation., Shi J, Chen WF, Zhang B, Fan SH, Ai X, Liu NN, Rety S, Xi XG, J Biol Chem. 2017 Feb 22. pii: jbc.M116.761510. doi: 10.1074/jbc.M116.761510. PMID:28228481

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk]

Biological Unit Coordinates (5lup.pdb1.gz) 37 Kb

Biological Unit Coordinates (5lup.pdb2.gz) 39 Kb

Biological Unit Coordinates (5lup.pdb3.gz) 38 Kb

Biological Unit Coordinates (5lup.pdb4.gz) 38 Kb

Biological Unit Coordinates (5lup.pdb5.gz) 37 Kb

Biological Unit Coordinates (5lup.pdb6.gz) 36 Kb

LPC: Ligand-Protein Contacts for 5LUP

CSU: Contacts of Structural Units for 5LUP

Structure Factors (814 Kb)

Retrieve 5LUP in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5LUP from S2C, [Save to disk]

Re-refined 5lup structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LUP in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lup_I] [5lup_J] [5lup_K] [5lup_L] [5lup] [5lup_A] [5lup_B] [5lup_C] [5lup_D] [5lup_E] [5lup_F] [5lup_G] [5lup_H]

SWISS-PROT database:

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