5LV9 Hydrolase date Sep 13, 2016
title Crystal Structure Of Thermophilic Tryptophan Halogenase (Th- Enzyme From Streptomycin Violaceusniger.
authors M.S.Dunstan, B.Menon
compound source
Molecule: Thermophilic Tryptophan Halogenase
Chain: A, B
Engineered: Yes
 Organism_scientific: Streptomyces Violaceusniger
Organism_taxid: 68280
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
symmetry Space Group: P 65
R_factor 0.179 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.140 67.140 477.370 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.33 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and biocatalytic scope of thermophilic flavin-dependent halogenase and flavin reductase enzymes., Menon BR, Latham J, Dunstan MS, Brandenburger E, Klemstein U, Leys D, Karthikeyan C, Greaney MF, Shepherd SA, Micklefield J, Org Biomol Chem. 2016 Oct 4;14(39):9354-9361. PMID:27714222
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (351 Kb) [Save to disk]
  • Biological Unit Coordinates (5lv9.pdb1.gz) 173 Kb
  • Biological Unit Coordinates (5lv9.pdb2.gz) 175 Kb
  • CSU: Contacts of Structural Units for 5LV9
  • Structure Factors (1004 Kb)
  • Retrieve 5LV9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LV9 from S2C, [Save to disk]
  • Re-refined 5lv9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LV9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LV9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lv9_A] [5lv9] [5lv9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LV9
  • Community annotation for 5LV9 at PDBWiki (http://pdbwiki.org)

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