5LXG	Membrane Protein	date	Sep 21, 2016
title	Revised Crystal Structure Of The Human Adiponectin Receptor Open Conformation
authors	C.Leyrat, I.Vasiliauskaite-Brooks, S.Granier
compound		source
Molecule: Adiponectin Receptor Protein 1 Chain: A Synonym: Progestin And Adipoq Receptor Family Member I Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Adipor1, Paqr1, Tesbp1a, Cgi-45 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111
Molecule: V Region Heavy Chain Chain: H Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Other_details: E.Coli Cell-Free Protein Synthesis
Molecule: V Region Light Chain Chain: L Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Other_details: E.Coli Cell-Free Protein Synthesis
symmetry	Space Group: C 2 2 21	R_factor 0.225 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.310 194.110 74.330 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.73 Å
ligand	SO4, ZN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural insights into adiponectin receptors suggest ceramidase activity., Vasiliauskaite-Brooks I, Sounier R, Rochaix P, Bellot G, Fortier M, Hoh F, De Colibus L, Bechara C, Saied EM, Arenz C, Leyrat C, Granier S, Nature. 2017 Mar 22. doi: 10.1038/nature21714. PMID:28329765

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk] Biological Unit Coordinates (5lxg.pdb1.gz) 171 Kb LPC: Ligand-Protein Contacts for 5LXG CSU: Contacts of Structural Units for 5LXG Structure Factors (306 Kb) Retrieve 5LXG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LXG from S2C, [Save to disk] Re-refined 5lxg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LXG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LXG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lxg_L] [5lxg_H] [5lxg] [5lxg_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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