5M6D date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ACY, CA, CL, CSU, GOL enzyme
Gene ERS003549 ; ERS019166 ; ERS019420 ; ERS019499 ; ERS020135 ; ERS020141 ; ERS020142 ; ERS020143 ; ERS020145 ; ERS020146 ; ERS020147 ; ERS020151 ; ERS020155 ; ERS020157 ; ERS020178 ; ERS020520 ; ERS020522 ; ERS020523 ; ERS020524 ; ERS020526 ; ERS020526 ; ERS020527 ; ERS020531 ; ERS020539 ; ERS020541 ; ERS020726 ; ERS020822 ; ERS020831 ; ERS020873 ; ERS020881 ; ERS021047 ; ERS021354 ; ERS021360 ; ERS021447 ; ERS022199 ; ERS022232 ; ERS096208 ; ERS232497 ; ERS367628 ; ERS367811 ; ERS394170 ; ERS409165 ; ERS409372 ; ERS409444 ; ERS455085 ; ERS515225 ; GAPA ; SPNNT
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceDeciphering key residues involved in the virulence-promoting interactions between Streptococcus pneumoniae and human plasminogen., Moreau C, Terrasse R, Thielens NM, Vernet T, Gaboriaud C, Di Guilmi AM, J Biol Chem. 2016 Dec 23. pii: jbc.M116.764209. doi: 10.1074/jbc.M116.764209. PMID:28011643
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (330 Kb) [Save to disk]
  • Biological Unit Coordinates (5m6d.pdb1.gz) 640 Kb
  • LPC: Ligand-Protein Contacts for 5M6D
  • CSU: Contacts of Structural Units for 5M6D
  • Structure Factors (1104 Kb)
  • Retrieve 5M6D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M6D from S2C, [Save to disk]
  • Re-refined 5m6d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5M6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m6d] [5m6d_A] [5m6d_B]
  • SWISS-PROT database:

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science