5MBW Hydrolase date Nov 09, 2016
title Crystal Structure Of Bace-1 In Complex With Pep#3
authors A.Kuglstatter, M.Stihle, J.Benz
compound source
Molecule: Beta-Secretase 1
Chain: A
Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Mutation: Yes
Other_details: Engineered Mutation
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Bace1 Inhibitor Peptide Pep#3
Chain: B
Engineered: Yes
Other_details: Please See Uploaded Gif File.

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: F 2 3
R_factor 0.163 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
206.833 206.833 206.833 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand CL, DPR, STA enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePotent and Selective BACE-1 Peptide Inhibitors Lower Brain Abeta Levels Mediated by Brain Shuttle Transport., Ruderisch N, Schlatter D, Kuglstatter A, Guba W, Huber S, Cusulin C, Benz J, Rufer AC, Hoernschemeyer J, Schweitzer C, Bulau T, Gartner A, Hoffmann E, Niewoehner J, Patsch C, Baumann K, Loetscher H, Kitas E, Freskgard PO, EBioMedicine. 2017 Sep 7. pii: S2352-3964(17)30351-1. doi:, 10.1016/j.ebiom.2017.09.004. PMID:28923680
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (5mbw.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 5MBW
  • CSU: Contacts of Structural Units for 5MBW
  • Structure Factors (488 Kb)
  • Retrieve 5MBW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MBW from S2C, [Save to disk]
  • View 5MBW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MBW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mbw_A] [5mbw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MBW
  • Community annotation for 5MBW at PDBWiki (http://pdbwiki.org)

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