5MCQ Hydrolase date Nov 10, 2016
title Crystal Structure Of Bace-1 In Complex With Active Site And Binding Peptide Inhibitor
authors A.Kuglstatter, M.Stihle, J.Benz
compound source
Molecule: Beta-Secretase 1
Chain: A
Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Bace-1 Active And Exosite Binding Inhibitor
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 32 2 1
R_factor 0.178 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.930 101.930 116.350 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.82 Å
ligand DLY, DPR, EDO, NH2, STA enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePotent and Selective BACE-1 Peptide Inhibitors Lower Brain Abeta Levels Mediated by Brain Shuttle Transport., Ruderisch N, Schlatter D, Kuglstatter A, Guba W, Huber S, Cusulin C, Benz J, Rufer AC, Hoernschemeyer J, Schweitzer C, Bulau T, Gartner A, Hoffmann E, Niewoehner J, Patsch C, Baumann K, Loetscher H, Kitas E, Freskgard PO, EBioMedicine. 2017 Sep 7. pii: S2352-3964(17)30351-1. doi:, 10.1016/j.ebiom.2017.09.004. PMID:28923680
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (5mcq.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 5MCQ
  • CSU: Contacts of Structural Units for 5MCQ
  • Structure Factors (1774 Kb)
  • Retrieve 5MCQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MCQ from S2C, [Save to disk]
  • View 5MCQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MCQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mcq_A] [5mcq_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MCQ
  • Community annotation for 5MCQ at PDBWiki (http://pdbwiki.org)

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