5MDX date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CHL, CLA, FE2, HEM, PHO enzyme
Gene
Ontology
ChainFunctionProcessComponent
5, 7, N, S, Y, 3, G, g, n, r, y, 2, 4, 1, R, 6, s, 8


C, c


H, h


I, i


K, k


T, t


X, x


Z, z


a, A


b, B


d, D


e, E


f, F


l, L


m, M


o, O


w, W


Primary referenceSubunit and chlorophyll organization of the plant photosystem II supercomplex., van Bezouwen LS, Caffarri S, Kale RS, Kouril R, Thunnissen AWH, Oostergetel GT, Boekema EJ, Nat Plants. 2017 Jun 12;3:17080. doi: 10.1038/nplants.2017.80. PMID:28604725
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1529 Kb) [Save to disk]
  • Biological Unit Coordinates (5mdx.pdb1.gz) 1410 Kb
  • LPC: Ligand-Protein Contacts for 5MDX
  • CSU: Contacts of Structural Units for 5MDX
  • Retrieve 5MDX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MDX from S2C, [Save to disk]
    • View 5MDX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mdx_1] [5mdx_2] [5mdx_3] [5mdx_4] [5mdx_5] [5mdx_6] [5mdx_7] [5mdx_8] [5mdx_A] [5mdx_B] [5mdx_C] [5mdx_D] [5mdx_E] [5mdx_F] [5mdx_G] [5mdx_H] [5mdx_I] [5mdx_K] [5mdx_L] [5mdx_M] [5mdx_N] [5mdx_O] [5mdx_R] [5mdx_S] [5mdx_T] [5mdx_W] [5mdx_X] [5mdx_Y] [5mdx_Z] [5mdx_a] [5mdx_b] [5mdx_c] [5mdx_d] [5mdx_e] [5mdx_f] [5mdx_g] [5mdx_h] [5mdx_i] [5mdx_k] [5mdx_l] [5mdx_m] [5mdx_n] [5mdx_o] [5mdx_r] [5mdx_s] [5mdx_t] [5mdx_w] [5mdx_x] [5mdx_y] [5mdx_z]
  • SWISS-PROT database:

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