OCA Atlas for 5MFD

5MFD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Primary reference

Structures of designed armadillo repeat proteins binding to peptides fused to globular domains., Hansen S, Kiefer JD, Madhurantakam C, Mittl PRE, Pluckthun A, Protein Sci. 2017 Oct;26(10):1942-1952. doi: 10.1002/pro.3229. Epub 2017 Jul 25. PMID:28691351

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (940 Kb) [Save to disk]

Biological Unit Coordinates (5mfd.pdb1.gz) 142 Kb

Biological Unit Coordinates (5mfd.pdb2.gz) 139 Kb

Biological Unit Coordinates (5mfd.pdb3.gz) 140 Kb

Biological Unit Coordinates (5mfd.pdb4.gz) 140 Kb

Biological Unit Coordinates (5mfd.pdb5.gz) 106 Kb

Biological Unit Coordinates (5mfd.pdb6.gz) 107 Kb

Biological Unit Coordinates (5mfd.pdb7.gz) 107 Kb

Biological Unit Coordinates (5mfd.pdb8.gz) 108 Kb

LPC: Ligand-Protein Contacts for 5MFD

CSU: Contacts of Structural Units for 5MFD

Structure Factors (14898 Kb)

Retrieve 5MFD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5MFD from S2C, [Save to disk]

Re-refined 5mfd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5MFD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mfd_A] [5mfd_B] [5mfd_C] [5mfd_D] [5mfd_E] [5mfd_F] [5mfd_G] [5mfd_H] [5mfd_I] [5mfd_J] [5mfd_K] [5mfd_L]

SWISS-PROT database:

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