5MXP Hydrolase date Jan 24, 2017
title Haloalkane Dehalogenase Dmxa From Marinobacter Sp. Elb17 Pos Unique Catalytic Residue
authors K.Tratsiak, P.Rezacova, T.Prudnikova
compound source
Molecule: Alphabeta Hydrolase
Chain: A, B
Synonym: Dmxa
Ec: 3.8.1.5
Engineered: Yes
 Organism_scientific: Marinobacter Sp. Elb17
Organism_taxid: 270374
Gene: Melb17_23105
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Dh5a
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.371 78.343 150.514 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand ACT, NA enzyme Hydrolase E.C.3.8.1.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (5mxp.pdb1.gz) 209 Kb
  • LPC: Ligand-Protein Contacts for 5MXP
  • CSU: Contacts of Structural Units for 5MXP
  • Structure Factors (1402 Kb)
  • Retrieve 5MXP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MXP from S2C, [Save to disk]
    • View 5MXP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MXP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mxp_B] [5mxp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MXP
  • Community annotation for 5MXP at PDBWiki (http://pdbwiki.org)

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