5ND3 Motor Protein date Mar 07, 2017
title Microtubule-Bound Mklp2 Motor Domain In The With No Nucleoti
authors J.Atherton, I.M.Yu, A.Cook, J.M.Muretta, A.P.Joseph, J.Major, Y.So J.Clause, M.Topf, S.S.Rosenfeld, A.Houdusse, C.A.Moores
compound source
Molecule: Kinesin-Like Protein Kif20a
Chain: C
Synonym: Kinesin-Like Protein 174,Rab6-Interacting Kinesin- Protein,Rabkinesin-6;
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Kif20a, Rab6kifl
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tubulin Alpha Chain
Chain: A
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Tubulin Beta-2b Chain
Chain: B
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 6.10 Å
ligand GDP, GTP, MG, TA1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceThe divergent mitotic kinesin MKLP2 exhibits atypical structure and mechanochemistry., Atherton J, Yu IM, Cook A, Muretta JM, Joseph A, Major J, Sourigues Y, Clause J, Topf M, Rosenfeld SS, Houdusse A, Moores CA, Elife. 2017 Aug 11;6. pii: e27793. doi: 10.7554/eLife.27793. PMID:28826477
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (798 Kb) [Save to disk]
  • Biological Unit Coordinates (5nd3.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 5ND3
  • CSU: Contacts of Structural Units for 5ND3
  • Retrieve 5ND3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ND3 from S2C, [Save to disk]
    • View 5ND3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ND3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nd3_B] [5nd3_C] [5nd3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ND3
  • Community annotation for 5ND3 at PDBWiki (http://pdbwiki.org)

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