OCA Atlas for 5NTD

5NTD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BCT, BES, EPE, MN, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, E, L, H, K, F, I, G, B, C, J, A

Primary reference

Structural Characterization of Acidic M17 Leucine Aminopeptidases from the TriTryps and Evaluation of Their Role in Nutrient Starvation in Trypanosoma brucei., Timm J, Valente M, Garcia-Caballero D, Wilson KS, Gonzalez-Pacanowska D, mSphere. 2017 Aug 16;2(4). pii: e00226-17. doi: 10.1128/mSphere.00226-17., eCollection 2017 Jul-Aug. PMID:28815215

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (968 Kb) [Save to disk]

Biological Unit Coordinates (5ntd.pdb1.gz) 481 Kb

Biological Unit Coordinates (5ntd.pdb2.gz) 488 Kb

Biological Unit Coordinates (5ntd.pdb3.gz) 482 Kb

LPC: Ligand-Protein Contacts for 5NTD

CSU: Contacts of Structural Units for 5NTD

Structure Factors (8829 Kb)

Retrieve 5NTD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5NTD from S2C, [Save to disk]

Re-refined 5ntd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5NTD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ntd_I] [5ntd_A] [5ntd_B] [5ntd_C] [5ntd_D] [5ntd_E] [5ntd_F] [5ntd_G] [5ntd_H] [5ntd_J] [5ntd_K] [5ntd_L]

SWISS-PROT database:

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