5NYZ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand DUP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDissecting the link between the enzymatic activity and the SaPI inducing capacity of the phage 80alpha dUTPase., Alite C, Humphrey S, Donderis J, Maiques E, Ciges-Tomas JR, Penades JR, Marina A, Sci Rep. 2017 Sep 11;7(1):11234. doi: 10.1038/s41598-017-11234-9. PMID:28894239
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (5nyz.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 5NYZ
  • CSU: Contacts of Structural Units for 5NYZ
  • Structure Factors (319 Kb)
  • Retrieve 5NYZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NYZ from S2C, [Save to disk]
  • View 5NYZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nyz_A]
  • SWISS-PROT database:

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