5OA2 Transferase date Jun 20, 2017
title Crystal Structure Of Scgas2 In Complex With Compound 8
authors I.Delso, J.Valero-Gonzalez, F.Gomollon-Bel, J.Castro-Lopez, W.Fa I.Navratilova, D.Van Aalten, T.Tejero, P.Merino, R.Hurtado-Guer
compound source
Molecule: 1,3-Beta-Glucanosyltransferase Gas2
Chain: A, B, C
Synonym: Glycolipid-Anchored Surface Protein 2
Ec: 2.4.1.-
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292
Gene: Gas2, Ylr343w, L8300.5
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.569 139.440 161.654 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand 9PW, BGC, EDO, SO4 enzyme Transferase E.C.2.4.1 BRENDA
Primary referenceInhibitors against Fungal Cell Wall Remodeling Enzymes., Delso I, Valero-Gonzalez J, Gomollon-Bel F, Castro-Lopez J, Fang W, Navratilova I, van Aalten DMF, Tejero T, Merino P, Hurtado-Guerrero R, ChemMedChem. 2018 Jan 22;13(2):128-132. doi: 10.1002/cmdc.201700720. Epub 2017, Dec 12. PMID:29164827
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (450 Kb) [Save to disk]
  • Biological Unit Coordinates (5oa2.pdb1.gz) 147 Kb
  • Biological Unit Coordinates (5oa2.pdb2.gz) 150 Kb
  • Biological Unit Coordinates (5oa2.pdb3.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 5OA2
  • CSU: Contacts of Structural Units for 5OA2
  • Structure Factors (3742 Kb)
  • Retrieve 5OA2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OA2 from S2C, [Save to disk]
    • View 5OA2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5OA2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j5oa2, region A:1-429 [Jmol] [rasmolscript] [script source]
        - Domain d1i5oa2, region A:151-310 [Jmol] [rasmolscript] [script source]
        - Domain d1s5oa2, region A:386-599 [Jmol] [rasmolscript] [script source]
        - Domain d1r5oa2, region A:555-622 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oa2_B] [5oa2_C] [5oa2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5OA2
  • Community annotation for 5OA2 at PDBWiki (http://pdbwiki.org)

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