5OPQ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL, MPD, TRS enzyme
Primary referenceCarrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria., Ficko-Blean E, Prechoux A, Thomas F, Rochat T, Larocque R, Zhu Y, Stam M, Genicot S, Jam M, Calteau A, Viart B, Ropartz D, Perez-Pascual D, Correc G, Matard-Mann M, Stubbs KA, Rogniaux H, Jeudy A, Barbeyron T, Medigue C, Czjzek M, Vallenet D, McBride MJ, Duchaud E, Michel G, Nat Commun. 2017 Nov 22;8(1):1685. doi: 10.1038/s41467-017-01832-6. PMID:29162826
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (475 Kb) [Save to disk]
  • Biological Unit Coordinates (5opq.pdb1.gz) 237 Kb
  • Biological Unit Coordinates (5opq.pdb2.gz) 236 Kb
  • LPC: Ligand-Protein Contacts for 5OPQ
  • CSU: Contacts of Structural Units for 5OPQ
  • Structure Factors (2941 Kb)
  • Retrieve 5OPQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OPQ from S2C, [Save to disk]
    • View 5OPQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5opq_A] [5opq_B] [5opq_C] [5opq_D]
  • SWISS-PROT database:

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