5OWO Motor Protein date Sep 01, 2017
title Human Cytoplasmic Dynein N-Terminus Dimerization Domain At 1 Angstrom Resolution
authors L.Urnavicius, C.K.Lau, M.M.Elshenawy, E.Morales-Rios, C.Motz, A.Y A.P.Carter
compound source
Molecule: Cytoplasmic Dynein 1 Heavy Chain 1
Chain: A, B, C, D
Synonym: Cytoplasmic Dynein Heavy Chain 1,Dynein Heavy Chai Cytosolic;
Engineered: Yes
Other_details: Selenomethionine Labeled Protein.
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dync1h1, Dhc1, Dnch1, Dncl, Dnecl, Dyhc, Kiaa0325
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.196 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.242 175.560 50.444 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.79 Å
ligand CA, GOL, K, MG, MSE, NA enzyme
Primary referenceCryo-EM shows how dynactin recruits two dyneins for faster movement., Urnavicius L, Lau CK, Elshenawy MM, Morales-Rios E, Motz C, Yildiz A, Carter AP, Nature. 2018 Feb 7;554(7691):202-206. doi: 10.1038/nature25462. PMID:29420470
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (5owo.pdb1.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 5OWO
  • CSU: Contacts of Structural Units for 5OWO
  • Structure Factors (2359 Kb)
  • Retrieve 5OWO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OWO from S2C, [Save to disk]
    • View 5OWO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5OWO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5owo_A] [5owo_B] [5owo_D] [5owo_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5OWO
  • Community annotation for 5OWO at PDBWiki (http://pdbwiki.org)

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