5T4Q Hydrolase date Aug 29, 2016
title Autoinhibited E. Coli Atp Synthase State 3
authors M.Sobti, C.Smits, A.S.W.Wong, R.Ishmukhametov, D.Stock, S.Sandin, A.G.Stewart
compound source
Molecule: Atp Synthase Subunit Alpha
Chain: A, B, C
Synonym: Atp Synthase F1 Sector Subunit Alpha,F-Atpase Subu
Ec: 3.6.3.14
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpa, Ecs88_4156
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Subunit Beta
Chain: D, E, F
Synonym: Atp Synthase F1 Sector Subunit Beta,F-Atpase Subun
Ec: 3.6.3.14
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpd, Ecs88_4154
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Gamma Chain
Chain: G
Synonym: Atp Synthase F1 Sector Gamma Subunit,F-Atpase Gamm
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpg, Ecs88_4155
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Epsilon Chain
Chain: H
Synonym: Atp Synthase F1 Sector Epsilon Subunit,F-Atpase Ep Subunit;
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpc, Ecs88_4153
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Subunit B
Chain: I, J
Synonym: Atp Synthase F(0) Sector Subunit B,Atpase Subunit Atpase Subunit B,F-Atpase Subunit B;
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpf, Z5234, Ecs4678
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Subunit A
Chain: K
Synonym: Atp Synthase F0 Sector Subunit A,F-Atpase Subunit
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpb, Ec55989_4213
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Subunit Delta
Chain: L
Synonym: Atp Synthase F(1) Sector Subunit Delta,F-Type Atpa Delta,F-Atpase Subunit Delta;
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atph, Ecs88_4157
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Subunit C
Chain: M, N, O, P, Q, R, S, T, U, V
Synonym: Atp Synthase F(0) Sector Subunit C,F-Type Atpase S F-Atpase Subunit C,Lipid-Binding Protein;
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpe, Eciai39_4341
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 8.53 Å
ligand ADP, ATP enzyme Hydrolase E.C.3.6.3.14 BRENDA
Gene EC55989 ; ECIAI39 ; ECS88 ; ECS88 ; ECS88 ; ECS88 ; ECS88
Gene
Ontology
ChainFunctionProcessComponent
C, A, B


F, E, D


G


H


J, I


K


L


S, T, N, V, Q, M, O, P, R, U


Primary referenceCryo-EM structures of the autoinhibited E. coli ATP synthase in three rotational states., Sobti M, Smits C, Wong AS, Ishmukhametov R, Stock D, Sandin S, Stewart AG, Elife. 2016 Dec 21;5. pii: e21598. doi: 10.7554/eLife.21598. PMID:28001127
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (489 Kb) [Save to disk]
  • Biological Unit Coordinates (5t4q.pdb1.gz) 465 Kb
  • LPC: Ligand-Protein Contacts for 5T4Q
  • CSU: Contacts of Structural Units for 5T4Q
  • Retrieve 5T4Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T4Q from S2C, [Save to disk]
    • View 5T4Q in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5T4Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t4q_H] [5t4q_S] [5t4q_T] [5t4q_P] [5t4q_C] [5t4q_F] [5t4q_Q] [5t4q_K] [5t4q_L] [5t4q_M] [5t4q_V] [5t4q] [5t4q_O] [5t4q_J] [5t4q_N] [5t4q_R] [5t4q_B] [5t4q_I] [5t4q_E] [5t4q_D] [5t4q_U] [5t4q_G] [5t4q_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5T4Q
  • Community annotation for 5T4Q at PDBWiki (http://pdbwiki.org)

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