5T5I Oxidoreductase date Aug 31, 2016
title Tungsten-Containing Formylmethanofuran Dehydrogenase From Methanothermobacter Wolfeii, Orthorhombic Form At 1.9 A
authors T.Wagner, U.Ermler, S.Shima
compound source
Molecule: Tungsten Formylmethanofuran Dehydrogenase Subunit
Chain: A, I
Other_details: Native Formylmethanofuran Dehydrogenase Subu Containing The Carboxylysine At Position 178;
Organism_scientific: Methanothermobacter Wolfeii
Organism_taxid: 145261

Molecule: Tungsten Formylmethanofuran Dehydrogenase Subunit
Chain: B, J

Organism_scientific: Methanothermobacter Sp. Cat2
Organism_taxid: 866790

Molecule: Tungsten-Containing Formylmethanofuran Dehydrogen Subunit C;
Chain: C, K
Synonym: Tungsten-Containing Formylmethanofuran Dehydrogena Subunit C;
Ec: 1.2.99.5

Organism_scientific: Methanothermobacter Wolfeii
Organism_taxid: 145261

Molecule: Tungsten Formylmethanofuran Dehydrogenase Subunit
Chain: D, L

Organism_scientific: Methanothermobacter Wolfeii
Organism_taxid: 145261

Molecule: Tungsten Formylmethanofuran Dehydrogenase Subunit
Chain: F, N

Organism_scientific: Methanothermobacter Wolfeii
Organism_taxid: 145261

Molecule: Tungsten Formylmethanofuran Dehydrogenase Subunit
Chain: G, P

Organism_scientific: Methanothermobacter Wolfeii
Organism_taxid: 145261
symmetry Space Group: P 21 21 21
R_factor 0.152 R_Free 0.172
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.644 174.576 205.425 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA, GOL, H2S, K, KCX, MG, MGD, NA, SF4, W, ZN enzyme Oxidoreductase E.C.1.2.99.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, I


D, L


F, N


J, B


K, C


P, G


Primary referenceThe methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters., Wagner T, Ermler U, Shima S, Science. 2016 Oct 7;354(6308):114-117. PMID:27846502
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1221 Kb) [Save to disk]
  • Biological Unit Coordinates (5t5i.pdb1.gz) 1200 Kb
  • LPC: Ligand-Protein Contacts for 5T5I
  • CSU: Contacts of Structural Units for 5T5I
  • Structure Factors (22845 Kb)
  • Retrieve 5T5I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T5I from S2C, [Save to disk]
  • Re-refined 5t5i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5T5I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5T5I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t5i_C] [5t5i_G] [5t5i_D] [5t5i] [5t5i_F] [5t5i_I] [5t5i_B] [5t5i_A] [5t5i_L] [5t5i_N] [5t5i_P] [5t5i_K] [5t5i_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5T5I
  • Community annotation for 5T5I at PDBWiki (http://pdbwiki.org)

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