5THT date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand B3N, EDO, K, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B, C, D


Primary referenceStructural and Functional Influence of the Glycine-Rich Loop G(302)GGGY on the Catalytic Tyrosine of Histone Deacetylase 8., Porter NJ, Christianson NH, Decroos C, Christianson DW, Biochemistry. 2016 Dec 6;55(48):6718-6729. doi: 10.1021/acs.biochem.6b01014. Epub, 2016 Nov 28. PMID:27933794
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (237 Kb) [Save to disk]
  • Biological Unit Coordinates (5tht.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (5tht.pdb2.gz) 62 Kb
  • Biological Unit Coordinates (5tht.pdb3.gz) 61 Kb
  • Biological Unit Coordinates (5tht.pdb4.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 5THT
  • CSU: Contacts of Structural Units for 5THT
  • Structure Factors (3950 Kb)
  • Retrieve 5THT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5THT from S2C, [Save to disk]
  • Re-refined 5tht structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5THT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tht] [5tht_A] [5tht_B] [5tht_C] [5tht_D]
  • SWISS-PROT database:

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