5TUB Hydrolase Activator date Nov 05, 2016
title Crystal Structure Of The Shark Tbc1d15 Gap Domain
authors Y.N.Chen, W.Wang, D.Cheng, Y.Ge, X.Gu, X.E.Zhou, F.Ye, H.E.Xu, Z.Lv
compound source
Molecule: Shark Tbc1d15 Gtpase-Activating Protein
Chain: A, B, C, D
Fragment: Tbc1d15 Gap Domain
Engineered: Yes
 Organism_scientific: Squalimorphii
Organism_common: Sharks
Organism_taxid: 118040
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.215 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
224.790 149.740 95.030 90.00 108.93 90.00
method X-Ray Diffractionresolution 2.85 Å
Primary referenceCrystal structure of TBC1D15 GTPase-activating protein (GAP) domain and its activity on Rab GTPases., Chen YN, Gu X, Zhou XE, Wang W, Cheng D, Ge Y, Ye F, Xu HE, Lv Z, Protein Sci. 2017 Feb 7. doi: 10.1002/pro.3132. PMID:28168758
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (5tub.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (5tub.pdb2.gz) 58 Kb
  • Biological Unit Coordinates (5tub.pdb3.gz) 57 Kb
  • Biological Unit Coordinates (5tub.pdb4.gz) 58 Kb
  • CSU: Contacts of Structural Units for 5TUB
  • Structure Factors (1130 Kb)
  • Retrieve 5TUB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TUB from S2C, [Save to disk]
  • Re-refined 5tub structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TUB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TUB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tub_B] [5tub_A] [5tub_C] [5tub] [5tub_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TUB
  • Community annotation for 5TUB at PDBWiki (http://pdbwiki.org)

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