5TUM Oxidoreductase date Nov 06, 2016
title Crystal Structure Of Tetracycline Destructase Tet(56)
authors J.Park, N.H.Tolia
compound source
Molecule: Tetracycline Destructase Tet(56)
Chain: A, B
Engineered: Yes
 Organism_scientific: Legionella Longbeachae
Organism_taxid: 450
Gene: Llo_2673
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b(+)
symmetry Space Group: P 21 21 2
R_factor 0.240 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.450 114.010 94.840 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand FAD enzyme
Gene LLO
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePlasticity, dynamics, and inhibition of emerging tetracycline resistance enzymes., Park J, Gasparrini AJ, Reck MR, Symister CT, Elliott JL, Vogel JP, Wencewicz TA, Dantas G, Tolia NH, Nat Chem Biol. 2017 May 8. doi: 10.1038/nchembio.2376. PMID:28481346
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • Biological Unit Coordinates (5tum.pdb1.gz) 130 Kb
  • Biological Unit Coordinates (5tum.pdb2.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 5TUM
  • CSU: Contacts of Structural Units for 5TUM
  • Structure Factors (136 Kb)
  • Retrieve 5TUM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TUM from S2C, [Save to disk]
  • Re-refined 5tum structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TUM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TUM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tum_A] [5tum_B] [5tum]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TUM
  • Community annotation for 5TUM at PDBWiki (http://pdbwiki.org)

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