5UX5 Oxidoreductase Transferase date Feb 22, 2017
title Structure Of Proline Utilization A (Puta) From Corynebacteri Freiburgense
authors J.J.Tanner
compound source
Molecule: Bifunctional Protein Proline Utilization A (Puta)
Chain: A, B, C, D
Ec: 1.5.5.22, 1.2.1.88
Engineered: Yes
 Organism_scientific: Corynebacterium Freiburgense
Organism_taxid: 556548
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.183 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.959 116.360 140.734 71.48 89.68 83.42
method X-Ray Diffractionresolution 2.70 Å
ligand FAD, NAD, SO4 enzyme Oxidoreductase E.C.1.5.5.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure and characterization of a class 3B proline utilization A: ligand-induced dimerization and importance of the C-terminal domain for catalysis., Korasick D, Gamage TT, Christgen S, Stiers KM, Beamer LJ, Henzl MT, Becker DF, Tanner JJ, J Biol Chem. 2017 Apr 18. pii: jbc.M117.786855. doi: 10.1074/jbc.M117.786855. PMID:28420730
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1220 Kb) [Save to disk]
  • Biological Unit Coordinates (5ux5.pdb1.gz) 309 Kb
  • Biological Unit Coordinates (5ux5.pdb2.gz) 306 Kb
  • Biological Unit Coordinates (5ux5.pdb3.gz) 308 Kb
  • Biological Unit Coordinates (5ux5.pdb4.gz) 306 Kb
  • LPC: Ligand-Protein Contacts for 5UX5
  • CSU: Contacts of Structural Units for 5UX5
  • Structure Factors (1047 Kb)
  • Retrieve 5UX5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UX5 from S2C, [Save to disk]
  • Re-refined 5ux5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5UX5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5UX5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ux5_C] [5ux5_D] [5ux5_A] [5ux5] [5ux5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5UX5
  • Community annotation for 5UX5 at PDBWiki (http://pdbwiki.org)

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