OCA Atlas for 5V2C

5V2C

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

1PE, 2PE, BCR, BCT, CA, CL, CLA, DGD, EDO, FE2, FME, GOL, HEC, HEM, HTG, LHG, LMG, LMT, MG, MHS, OEX, P6G, PE8, PG4, PGE, PHO, PL9, SQD

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, c
H, h
M, m
T, t
U, u
X, x
Y, y
Z, z
a, A
b, B
d, D
e, E
f, F
i, I
j, J
k, K
l, L
o, O	oxygen evolving activity
v, V

Primary reference

Chlorophyll a with a farnesyl tail in thermophilic cyanobacteria., Wiwczar JM, LaFountain AM, Wang J, Frank HA, Brudvig GW, Photosynth Res. 2017 Jul 24. doi: 10.1007/s11120-017-0425-4. PMID:28741056

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2437 Kb) [Save to disk]

Biological Unit Coordinates (5v2c.pdb1.gz) 2347 Kb

LPC: Ligand-Protein Contacts for 5V2C

CSU: Contacts of Structural Units for 5V2C

Structure Factors (9027 Kb)

Retrieve 5V2C in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5V2C from S2C, [Save to disk]

View 5V2C in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5v2c_A] [5v2c_B] [5v2c_C] [5v2c_D] [5v2c_E] [5v2c_F] [5v2c_H] [5v2c_I] [5v2c_J] [5v2c_K] [5v2c_L] [5v2c_M] [5v2c_O] [5v2c_T] [5v2c_U] [5v2c_V] [5v2c_X] [5v2c_Y] [5v2c_Z] [5v2c_a] [5v2c_b] [5v2c_c] [5v2c_d] [5v2c_e] [5v2c_f] [5v2c_h] [5v2c_i] [5v2c_j] [5v2c_k] [5v2c_l] [5v2c_m] [5v2c_o] [5v2c_t] [5v2c_u] [5v2c_v] [5v2c_x] [5v2c_y] [5v2c_z]

SWISS-PROT database:

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]