5V6B Protein Binding date Mar 16, 2017
title Crystal Structure Of Gipc1
authors G.Shang, X.Zhang
compound source
Molecule: Pdz Domain-Containing Protein Gipc1
Chain: A, B
Fragment: Unp Residues 52-327
Synonym: Gaip C-Terminus-Interacting Protein,Rgs-Gaip-Inter Protein,Rgs19-Interacting Protein 1,Semaf Cytoplasmic Domai Associated Protein 1,Semcap-1,Synectin;
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Gipc1, Gipc, Rgs19ip1, Semcap1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.136 R_Free 0.175
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.396 77.625 80.346 90.00 89.95 90.00
method X-Ray Diffractionresolution 1.90 Å
Primary referenceStructure analyses reveal a regulated oligomerization mechanism of the PlexinD1/GIPC/myosin VI complex., Shang G, Brautigam CA, Chen R, Lu D, Torres-Vazquez J, Zhang X, Elife. 2017 May 24;6. pii: e27322. doi: 10.7554/eLife.27322. PMID:28537552
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk]
  • Biological Unit Coordinates (5v6b.pdb1.gz) 182 Kb
  • CSU: Contacts of Structural Units for 5V6B
  • Structure Factors (301 Kb)
  • Retrieve 5V6B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V6B from S2C, [Save to disk]
  • Re-refined 5v6b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5V6B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5V6B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v6b_B] [5v6b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5V6B
  • Community annotation for 5V6B at PDBWiki (http://pdbwiki.org)

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