5VAT Biosynthetic Protein date Mar 27, 2017
title Haemophilus Influenzae Lpoa: Monoclinic Form (Mon2) With 2 M Per A.U.
authors M.A.Saper, K.Sathiyamoorthy
compound source
Molecule: Penicillin-Binding Protein Activator Lpoa
Chain: A, B
Fragment: Unp Residues 33-575
Synonym: Pbp Activator Lpoa
Engineered: Yes
Other_details: Expressed Without His6 Tag Four Met Modeled To Difference Electron Density
Organism_scientific: Haemophilus Influenzae (Strain Atcc 51 11121 Kw20 Rd);
Organism_taxid: 71421
Strain: Atcc 51907 Dsm 11121 Kw20 Rd
Atcc: 51907
Gene: Lpoa, Hi_1655
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami(De3)Placi
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petblue-2
symmetry Space Group: P 1 21 1
R_factor 0.223 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.935 72.695 120.572 90.00 94.42 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • enzyme regulator activity


  • Primary referenceStructural analyses of the Haemophilus influenzae peptidoglycan synthase activator LpoA suggest multiple conformations in solution., Sathiyamoorthy K, Vijayalakshmi J, Tirupati B, Fan L, Saper MA, J Biol Chem. 2017 Sep 8. pii: jbc.M117.804997. doi: 10.1074/jbc.M117.804997. PMID:28887305
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (537 Kb) [Save to disk]
  • Biological Unit Coordinates (5vat.pdb1.gz) 266 Kb
  • Biological Unit Coordinates (5vat.pdb2.gz) 266 Kb
  • LPC: Ligand-Protein Contacts for 5VAT
  • CSU: Contacts of Structural Units for 5VAT
  • Structure Factors (654 Kb)
  • Retrieve 5VAT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VAT from S2C, [Save to disk]
  • View 5VAT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VAT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vat_A] [5vat_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VAT
  • Community annotation for 5VAT at PDBWiki (http://pdbwiki.org)

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