5VCW	Transferase Transferase Inhibitor	date	Apr 01, 2017
title	Crystal Structure Of Human Myt1 Kinase Domain In Complex Wit Pelitinib
authors	J.Y.Zhu, E.Schonbrunn
compound		source
Molecule: Membrane-Associated Tyrosine- And Threonine-Speci Inhibitory Kinase; Chain: A, B Fragment: Kinase Domain, Unp Residues 75-362 Synonym: Myt1 Kinase Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pkmyt1, Myt1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-Ripl Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: P 1 21 1	R_factor 0.196 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.510 112.900 72.710 90.00 109.27 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	93J, EDO, SO4	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis of Wee kinases functionality and inactivation by diverse small molecule inhibitors., Zhu JY, Cuellar RAD, Berndt N, Lee HE, Olesen SH, Martin MP, Jensen JT, Georg GI, Schonbrunn E, J Med Chem. 2017 Aug 9. doi: 10.1021/acs.jmedchem.7b00996. PMID:28792760

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk] Biological Unit Coordinates (5vcw.pdb1.gz) 95 Kb Biological Unit Coordinates (5vcw.pdb2.gz) 96 Kb LPC: Ligand-Protein Contacts for 5VCW CSU: Contacts of Structural Units for 5VCW Structure Factors (289 Kb) Retrieve 5VCW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VCW from S2C, [Save to disk]

View 5VCW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5VCW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vcw_B] [5vcw_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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