5VDV date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 9BV, SO4, ZN enzyme
Primary referenceThe catalytic mechanism of cyclic gmp-amp synthase (cGAS) and implications for innate immunity and inhibition., Hall J, Ralph EC, Shanker S, Wang H, Byrnes LJ, Horst R, Wong J, Brault A, Dumlao D, Smith JF, Dakin LA, Schmitt DC, Trujillo J, Vincent F, Griffor M, Aulabaugh AE, Protein Sci. 2017 Sep 22. doi: 10.1002/pro.3304. PMID:28940468
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (5vdv.pdb1.gz) 118 Kb
  • Biological Unit Coordinates (5vdv.pdb2.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 5VDV
  • CSU: Contacts of Structural Units for 5VDV
  • Structure Factors (285 Kb)
  • Retrieve 5VDV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VDV from S2C, [Save to disk]
    • View 5VDV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vdv_A] [5vdv_B]
  • SWISS-PROT database:

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