5VK1	Signaling Protein Inhibitor	date	Apr 20, 2017
title	Crystal Structure Of Human Mdm4 In Complex With A 12-Mer Lys Cysteine Side Chain Dithiocarbamate Stapled Peptide Inhibit
authors	W.D.Tolbert, N.Gohain, M.Pazgier
compound		source
Molecule: Protein Mdm4 Chain: A, C, E, G, I, K, M, O Fragment: Residues 24-108 Synonym: Double Minute 4 Protein,Mdm2-Like P53-Binding Prot Protein Mdmx,P53-Binding Protein Mdm4; Engineered: Yes Mutation: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Lysine-Cysteine Side Chain Dithiocarbamate Staple Inhibitor Pmi; Chain: B, D, F, H, J, L, N, P Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1	R_factor 0.279 R_Free 0.335
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.294 47.730 93.394 76.72 89.92 72.60
method	X-Ray Diffraction	resolution	2.69 Å
ligand	9E7, ACE, NH2	enzyme
Gene Ontology	Chain Function Process Component A, O, M, C, K, I, G, E
Primary reference	Dithiocarbamate-inspired side chain stapling chemistry for peptide drug design., Li X, Tolbert WD, Hu HG, Gohain N, Zou Y, Niu F, He WX, Yuan W, Su JC, Pazgier M, Lu W, Chem Sci. 2018 Nov 30;10(5):1522-1530. doi: 10.1039/c8sc03275k. eCollection 2019 , Feb 7. PMID:30809370

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (235 Kb) [Save to disk] Biological Unit Coordinates (5vk1.pdb1.gz) 31 Kb Biological Unit Coordinates (5vk1.pdb2.gz) 31 Kb Biological Unit Coordinates (5vk1.pdb3.gz) 31 Kb Biological Unit Coordinates (5vk1.pdb4.gz) 30 Kb Biological Unit Coordinates (5vk1.pdb5.gz) 31 Kb Biological Unit Coordinates (5vk1.pdb6.gz) 31 Kb Biological Unit Coordinates (5vk1.pdb7.gz) 30 Kb Biological Unit Coordinates (5vk1.pdb8.gz) 30 Kb LPC: Ligand-Protein Contacts for 5VK1 CSU: Contacts of Structural Units for 5VK1 Structure Factors (409 Kb) Retrieve 5VK1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VK1 from S2C, [Save to disk]

View 5VK1 in 3D

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Visual 3D analysis of 5VK1

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vk1_K] [5vk1_M] [5vk1_A] [5vk1_B] [5vk1_N] [5vk1_G] [5vk1_E] [5vk1_P] [5vk1_L] [5vk1_C] [5vk1_H] [5vk1_O] [5vk1_F] [5vk1_I] [5vk1_D] [5vk1_J] SWISS-PROT database: Domain organization of by SWISSPFAM

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