5VQD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and mechanistic analysis of a beta-glycoside phosphorylase identified by screening a metagenomic library., Macdonald SS, Patel A, Larmour VLC, Morgan-Lang C, Hallam SJ, Mark BL, Withers SG, J Biol Chem. 2018 Jan 9. pii: RA117.000948. doi: 10.1074/jbc.RA117.000948. PMID:29317495
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (5vqd.pdb1.gz) 170 Kb
  • Biological Unit Coordinates (5vqd.pdb2.gz) 339 Kb
  • LPC: Ligand-Protein Contacts for 5VQD
  • CSU: Contacts of Structural Units for 5VQD
  • Structure Factors (301 Kb)
  • Retrieve 5VQD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VQD from S2C, [Save to disk]
    • View 5VQD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vqd_A]
  • SWISS-PROT database:

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