5VZ4	Signaling Protein Protein Binding	date	May 26, 2017
title	Receptor-Growth Factor Crystal Structure At 2.20 Angstrom Re
authors	D.Lakshminarasimhan, A.White, R.K.Suto
compound		source
Molecule: Growthdifferentiation Factor 15 Chain: A Fragment: Unp Residues 197-308 Synonym: Gdf-15, Macrophage Inhibitory Cytokine 1, Mic-1, N Activated Gene 1 Protein, Nag-1, Nsaid-Regulated Gene 1 Pro 1, Placental Tgf-Beta, Placental Bone Morphogenetic Protein Differentiation Factor; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gdf15, Mic1, Pdf, Plab, Ptgfb Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Expi293f
Molecule: Gdnf Family Receptor Alpha-Like Chain: B Fragment: Unp Residues 115-351 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gfral, C6orf144, Unq9356pro34128 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: I 2 2 2	R_factor 0.191 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.352 88.768 121.293 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	BR, EDO, SO4	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	Non-homeostatic body weight regulation through a brainstem-restricted receptor for GDF15., Hsu JY, Crawley S, Chen M, Ayupova DA, Lindhout DA, Higbee J, Kutach A, Joo W, Gao Z, Fu D, To C, Mondal K, Li B, Kekatpure A, Wang M, Laird T, Horner G, Chan J, McEntee M, Lopez M, Lakshminarasimhan D, White A, Wang SP, Yao J, Yie J, Matern H, Solloway M, Haldankar R, Parsons T, Tang J, Shen WD, Alice Chen Y, Tian H, Allan BB, Nature. 2017 Sep 27. doi: 10.1038/nature24042. PMID:28953886

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (5vz4.pdb1.gz) 99 Kb LPC: Ligand-Protein Contacts for 5VZ4 CSU: Contacts of Structural Units for 5VZ4 Structure Factors (314 Kb) Retrieve 5VZ4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VZ4 from S2C, [Save to disk]

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Visual 3D analysis of 5VZ4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vz4_A] [5vz4_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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