5W59 Cytokine date Jun 14, 2017
title Crystal Structure Of A Monomeric Human Fgf9 In Complex With Ectodomain Of Human Fgfr1c
authors M.Mohammadi, J.Ma, Y.Liu
compound source
Molecule: Fibroblast Growth Factor 9
Chain: A
Fragment: Unp Residues 35-208
Synonym: Fgf-9, Glia-Activating Factor, Gaf, Heparin-Bindin Factor 9, Hbgf-9;
Engineered: Yes
Mutation: Yes
Other_details: Human Fgf9 Carrying D195al204al205a Triple In Its C-Terminal Tail That Renders The Ligand Monomeric;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgf9
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fibroblast Growth Factor Receptor 1
Chain: B
Fragment: Extracellular Ligand Binding Domain Of The "C" Sp Isoform (Unp Residues 142-365);
Synonym: Fgfr-1,Basic Fibroblast Growth Factor Receptor 1,B Fms-Like Tyrosine Kinase 2,Flt-2,N-Sam,Proto-Oncogene C-Fgr
Ec: 2.7.10.1
Engineered: Yes
Other_details: Ectodomain Of Human Fgfr1c Encompassing The Proximal D2 And D3 Region

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgfr1, Bfgfr, Cek, Fgfbr, Flg, Flt2, Hbgfr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.159 86.793 136.857 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand SO4 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRegulation of Receptor Binding Specificity of FGF9 by an Autoinhibitory Homodimerization., Liu Y, Ma J, Beenken A, Srinivasan L, Eliseenkova AV, Mohammadi M, Structure. 2017 Jul 11. pii: S0969-2126(17)30212-5. doi:, 10.1016/j.str.2017.06.016. PMID:28757146
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (5w59.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 5W59
  • CSU: Contacts of Structural Units for 5W59
  • Structure Factors (138 Kb)
  • Retrieve 5W59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W59 from S2C, [Save to disk]
  • View 5W59 in 3D
  • Proteopedia, because life has more than 2D.
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  • Visual 3D analysis of 5W59
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w59_B] [5w59_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W59
  • Community annotation for 5W59 at PDBWiki (http://pdbwiki.org)

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