5WQE Rna Binding Protein date Nov 26, 2016
title Crystal Structure Of Alicyclobacillus Acidoterrestris C2c1 I With Single-Guide Rna At 3.1 Angstrom Resolution
authors L.Liu, Y.L.Wang
compound source
Molecule: Crispr-Associated Endonuclease C2c1
Chain: A
Synonym: Aacc2c1
Ec: 3.1.-.-
Engineered: Yes
 Organism_scientific: Alicyclobacillus Acidoterrestris
Organism_taxid: 1356854
Strain: Atcc 49025 Dsm 3922 Cip 106132 Ncimb 13137
Gene: C2c1, N007_06525
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna (60-Mer)
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Alicyclobacillus Acidoterrestris Atcc
Organism_taxid: 1356854
symmetry Space Group: C 1 2 1
R_factor 0.238 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
194.554 129.836 84.001 90.00 110.00 90.00
method X-Ray Diffractionresolution 3.13 Å
ligand MSE enzyme Hydrolase E.C.3.1 BRENDA
Gene N007
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • endonuclease activity


    • Primary referenceC2c1-sgRNA Complex Structure Reveals RNA-Guided DNA Cleavage Mechanism., Liu L, Chen P, Wang M, Li X, Wang J, Yin M, Wang Y, Mol Cell. 2017 Jan 19;65(2):310-322. doi: 10.1016/j.molcel.2016.11.040. Epub 2016, Dec 15. PMID:27989439
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (5wqe.pdb1.gz) 191 Kb
  • LPC: Ligand-Protein Contacts for 5WQE
  • CSU: Contacts of Structural Units for 5WQE
  • Structure Factors (858 Kb)
  • Retrieve 5WQE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WQE from S2C, [Save to disk]
  • Re-refined 5wqe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5WQE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5WQE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wqe_A] [5wqe_B] [5wqe]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5WQE
  • Community annotation for 5WQE at PDBWiki (http://pdbwiki.org)

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