5X58 Viral Protein date Feb 15, 2017
title Prefusion Structure Of Sars-Cov Spike Glycoprotein, Conforma
authors Y.Yuan, D.Cao, Y.Zhang, J.Ma, J.Qi, Q.Wang, G.Lu, Y.Wu, J.Yan, Y.Shi, G.F.Gao
compound source
Molecule: Spike Glycoprotein
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Sars Coronavirus Bj01
Organism_taxid: 228407
Strain: Bj01
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.20 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCryo-EM structures of MERS-CoV and SARS-CoV spike glycoproteins reveal the dynamic receptor binding domains., Yuan Y, Cao D, Zhang Y, Ma J, Qi J, Wang Q, Lu G, Wu Y, Yan J, Shi Y, Zhang X, Gao GF, Nat Commun. 2017 Apr 10;8:15092. doi: 10.1038/ncomms15092. PMID:28393837
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (521 Kb) [Save to disk]
  • Biological Unit Coordinates (5x58.pdb1.gz) 511 Kb
  • LPC: Ligand-Protein Contacts for 5X58
  • CSU: Contacts of Structural Units for 5X58
  • Retrieve 5X58 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X58 from S2C, [Save to disk]
    • View 5X58 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5X58
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x58_A] [5x58_C] [5x58] [5x58_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5X58
  • Community annotation for 5X58 at PDBWiki (http://pdbwiki.org)

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