5XD0 Hydrolase date Mar 24, 2017
title Apo Structure Of Beta-1,3-1,4-Glucanase From Paenibacillus S
authors S.C.Baek, T.H.Ho, L.W.Kang, H.Kim
compound source
Molecule: Glucanase
Chain: A, B
Synonym: Beta-1,3-1,4-Glucanase
Ec: 3.2.1.73
Engineered: Yes
Organism_scientific: Paenibacillus Sp. X4
Organism_taxid: 1392929
Strain: X4
Gene: Lic8h
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.151 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.721 64.161 70.502 71.04 77.07 75.60
method X-Ray Diffractionresolution 1.79 Å
ligand PEG, PGE enzyme Hydrolase E.C.3.2.1.73 BRENDA
note 5XD0 supersedes 5X3A
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceImprovement of enzyme activity of beta-1,3-1,4-glucanase from Paenibacillus sp. X4 by error-prone PCR and structural insights of mutated residues., Baek SC, Ho TH, Lee HW, Jung WK, Gang HS, Kang LW, Kim H, Appl Microbiol Biotechnol. 2017 Feb 8. doi: 10.1007/s00253-017-8145-4. PMID:28180917
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (5xd0.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (5xd0.pdb2.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 5XD0
  • CSU: Contacts of Structural Units for 5XD0
  • Structure Factors (1880 Kb)
  • Retrieve 5XD0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XD0 from S2C, [Save to disk]
  • Re-refined 5xd0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5XD0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XD0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xd0_B] [5xd0] [5xd0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XD0
  • Community annotation for 5XD0 at PDBWiki (http://pdbwiki.org)

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