5XJ4 Immune System date Apr 29, 2017
title Complex Structure Of Durvalumab-Scfvpd-L1
authors S.Tan, K.Liu, Y.Chai, G.F.Gao, J.Qi
compound source
Molecule: Programmed Cell Death 1 Ligand 1
Chain: A
Synonym: Programmed Death Ligand 1,B7 Homolog 1,B7-H1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd274, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Durvalumab-Vh
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Durvalumab-Vl
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 2 3
R_factor 0.216 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
133.890 133.890 133.890 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
Primary referenceDistinct PD-L1 binding characteristics of therapeutic monoclonal antibody durvalumab., Tan S, Liu K, Chai Y, Zhang CW, Gao S, Gao GF, Qi J, Protein Cell. 2018 Jan;9(1):135-139. doi: 10.1007/s13238-017-0412-8. PMID:28488247
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (5xj4.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (5xj4.pdb2.gz) 41 Kb
  • Biological Unit Coordinates (5xj4.pdb3.gz) 37 Kb
  • CSU: Contacts of Structural Units for 5XJ4
  • Structure Factors (594 Kb)
  • Retrieve 5XJ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XJ4 from S2C, [Save to disk]
  • View 5XJ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XJ4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xj4_L] [5xj4_H] [5xj4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XJ4
  • Community annotation for 5XJ4 at PDBWiki (http://pdbwiki.org)

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