5YB1 Lipid Binding Protein date Sep 02, 2017
title Structure And Function Of Human Serum Albumin-Metal Agent Co
authors F.Yang, T.Wang, J.Wang, Y.Gou, Z.L.Zhang
compound source
Molecule: Serum Albumin
Chain: A, B
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alb, Gig20, Gig42, Pro0903, Pro1708, Pro2044, Pro2619 Pro2675, Unq696pro1341;
Expression_system: Pichia Kudriavzevii
Expression_system_taxid: 4909
symmetry Space Group: P 1
R_factor 0.219 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.492 95.653 96.642 104.67 101.43 89.97
method X-Ray Diffractionresolution 2.62 Å
ligand 8ZR, PLM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • antioxidant activity


    • Primary referenceDeveloping an Anticancer Copper(II) Multitarget Pro-Drug Based on the His146 Residue in the IB Subdomain of Modified Human Serum Albumin., Wang J, Gou Y, Zhang Z, Yu P, Qi J, Qin Q, Sun H, Wu X, Liang H, Yang F, Mol Pharm. 2018 Jun 4;15(6):2180-2193. doi: 10.1021/acs.molpharmaceut.8b00045., Epub 2018 May 10. PMID:29722993
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (392 Kb) [Save to disk]
  • Biological Unit Coordinates (5yb1.pdb1.gz) 194 Kb
  • Biological Unit Coordinates (5yb1.pdb2.gz) 195 Kb
  • LPC: Ligand-Protein Contacts for 5YB1
  • CSU: Contacts of Structural Units for 5YB1
  • Structure Factors (820 Kb)
  • Retrieve 5YB1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YB1 from S2C, [Save to disk]
    • View 5YB1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5YB1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m5yb1, region B:25-163,B:396-427 [Jmol] [rasmolscript] [script source]
        - Domain d1d5yb1, region B:3-56 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yb1_A] [5yb1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5YB1
  • Community annotation for 5YB1 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science