5YDD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	8TU, GOL, NA, SO4	enzyme
Primary reference	Characteristics of the essential pathogenicity factor Rv1828, a MerR family transcription regulator from Mycobacterium tuberculosis., Singh S, Sevalkar RR, Sarkar D, Karthikeyan S, FEBS J. 2018 Dec;285(23):4424-4444. doi: 10.1111/febs.14676. Epub 2018 Oct 25. PMID:30306715

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk] Biological Unit Coordinates (5ydd.pdb1.gz) 83 Kb LPC: Ligand-Protein Contacts for 5YDD CSU: Contacts of Structural Units for 5YDD Structure Factors (302 Kb) Retrieve 5YDD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YDD from S2C, [Save to disk]

View 5YDD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ydd_A] [5ydd_B] SWISS-PROT database:

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