5YEW Hydrolase date Sep 20, 2017
title Structural Basis For Gtp Hydrolysis And Conformational Chang Mitofusin 1 In Mediating Mitochondrial Fusion
authors L.Yan, Y.Qi, X.Huang, C.Yu
compound source
Molecule: Mitofusin-1,Mitofusin-1 Fusion Protein
Chain: A
Fragment: Unp Residues 1-364,Unp Residues 694-741
Synonym: Fzo Homolog,Transmembrane Gtpase Mfn1,Fzo Homolog, Transmembrane Gtpase Mfn1;
Ec: 3.6.5.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mfn1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Mitofusin-1,Mitofusin-1 Fusion Protein
Chain: B, C
Fragment: Unp Residues 1-364,Unp Residues 694-741
Synonym: Fzo Homolog,Transmembrane Gtpase Mfn1,Fzo Homolog, Transmembrane Gtpase Mfn1;
Ec: 3.6.5.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mfn1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.223 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
207.942 207.942 107.893 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand BEF, GDP, K, MG enzyme Hydrolase E.C.3.6.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural basis for GTP hydrolysis and conformational change of MFN1 in mediating membrane fusion., Yan L, Qi Y, Huang X, Yu C, Lan L, Guo X, Rao Z, Hu J, Lou Z, Nat Struct Mol Biol. 2018 Mar;25(3):233-243. doi: 10.1038/s41594-018-0034-8. Epub, 2018 Feb 26. PMID:29483649
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (5yew.pdb1.gz) 127 Kb
  • Biological Unit Coordinates (5yew.pdb2.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 5YEW
  • CSU: Contacts of Structural Units for 5YEW
  • Structure Factors (1289 Kb)
  • Retrieve 5YEW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YEW from S2C, [Save to disk]
  • View 5YEW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YEW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yew_B] [5yew_C] [5yew_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YEW
  • Community annotation for 5YEW at PDBWiki (http://pdbwiki.org)

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