5YGU		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	IOD, TLA	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	DapF stabilizes the substrate-favoring conformation of RppH to stimulate its RNA-pyrophosphohydrolase activity in Escherichia coli., Wang Q, Zhang D, Guan Z, Li D, Pei K, Liu J, Zou T, Yin P, Nucleic Acids Res. 2018 Jun 21. pii: 5042035. doi: 10.1093/nar/gky528. PMID:29931175

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk] Biological Unit Coordinates (5ygu.pdb1.gz) 142 Kb LPC: Ligand-Protein Contacts for 5YGU CSU: Contacts of Structural Units for 5YGU Structure Factors (803 Kb) Retrieve 5YGU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YGU from S2C, [Save to disk]

View 5YGU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ygu_A] [5ygu_B] SWISS-PROT database:

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