OCA Atlas for 5YIZ

5YIZ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

EF2, SO4, ZN

enzyme

Primary reference

Structural basis of thalidomide enantiomer binding to cereblon., Mori T, Ito T, Liu S, Ando H, Sakamoto S, Yamaguchi Y, Tokunaga E, Shibata N, Handa H, Hakoshima T, Sci Rep. 2018 Jan 22;8(1):1294. doi: 10.1038/s41598-018-19202-7. PMID:29358579

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk]

Biological Unit Coordinates (5yiz.pdb1.gz) 23 Kb

Biological Unit Coordinates (5yiz.pdb2.gz) 23 Kb

Biological Unit Coordinates (5yiz.pdb3.gz) 23 Kb

Biological Unit Coordinates (5yiz.pdb4.gz) 22 Kb

Biological Unit Coordinates (5yiz.pdb5.gz) 23 Kb

Biological Unit Coordinates (5yiz.pdb6.gz) 22 Kb

Biological Unit Coordinates (5yiz.pdb7.gz) 22 Kb

Biological Unit Coordinates (5yiz.pdb8.gz) 23 Kb

Biological Unit Coordinates (5yiz.pdb9.gz) 23 Kb

LPC: Ligand-Protein Contacts for 5YIZ

CSU: Contacts of Structural Units for 5YIZ

Structure Factors (3852 Kb)

Retrieve 5YIZ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5YIZ from S2C, [Save to disk]

View 5YIZ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5yiz_A] [5yiz_D] [5yiz_G] [5yiz_J] [5yiz_M] [5yiz_P] [5yiz_S] [5yiz_V] [5yiz_Y] [5yiz_b] [5yiz_e] [5yiz_h] [5yiz_k] [5yiz_n] [5yiz_q] [5yiz_t]

SWISS-PROT database:

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