5YPS date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 1PE, CA, GOL, MSE, PEG, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, D, E, F, A, B


Primary referenceStructural basis for the acetylation of histone H3K9 and H3K27 mediated by the histone chaperone Vps75 in Pneumocystis carinii., Chen Y, Zhang Y, Ye H, Dou Y, Lu D, Li X, Limper AH, Han J, Su D, Signal Transduct Target Ther. 2019 May 10;4:14. doi: 10.1038/s41392-019-0047-8., eCollection 2019. PMID:31098304
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (432 Kb) [Save to disk]
  • Biological Unit Coordinates (5yps.pdb1.gz) 141 Kb
  • Biological Unit Coordinates (5yps.pdb2.gz) 143 Kb
  • Biological Unit Coordinates (5yps.pdb3.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 5YPS
  • CSU: Contacts of Structural Units for 5YPS
  • Structure Factors (2174 Kb)
  • Retrieve 5YPS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YPS from S2C, [Save to disk]
  • View 5YPS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yps_A] [5yps_B] [5yps_C] [5yps_D] [5yps_E] [5yps_F]
  • SWISS-PROT database:

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