OCA Atlas for 5YQ0

5YQ0

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Primary reference

Interplay of a secreted protein with type IVb pilus for efficient enterotoxigenic Escherichia coli colonization., Oki H, Kawahara K, Maruno T, Imai T, Muroga Y, Fukakusa S, Iwashita T, Kobayashi Y, Matsuda S, Kodama T, Iida T, Yoshida T, Ohkubo T, Nakamura S, Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):7422-7427. doi:, 10.1073/pnas.1805671115. Epub 2018 Jun 25. PMID:29941571

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (454 Kb) [Save to disk]

Biological Unit Coordinates (5yq0.pdb1.gz) 62 Kb

Biological Unit Coordinates (5yq0.pdb2.gz) 61 Kb

Biological Unit Coordinates (5yq0.pdb3.gz) 62 Kb

Biological Unit Coordinates (5yq0.pdb4.gz) 61 Kb

Biological Unit Coordinates (5yq0.pdb5.gz) 62 Kb

Biological Unit Coordinates (5yq0.pdb6.gz) 61 Kb

Biological Unit Coordinates (5yq0.pdb7.gz) 60 Kb

Biological Unit Coordinates (5yq0.pdb8.gz) 62 Kb

LPC: Ligand-Protein Contacts for 5YQ0

CSU: Contacts of Structural Units for 5YQ0

Structure Factors (8662 Kb)

Retrieve 5YQ0 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5YQ0 from S2C, [Save to disk]

View 5YQ0 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5yq0_A] [5yq0_B] [5yq0_C] [5yq0_D] [5yq0_E] [5yq0_F] [5yq0_G] [5yq0_H]

SWISS-PROT database:

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