5YQ5	Protein Fibril	date	Nov 05, 2017
title	Crystal Structure Of Human Osteomodulin
authors	J.M.M.Caaveiro, T.Tashima, K.Tsumoto
compound		source
Molecule: Osteomodulin Chain: A, B, C, D Synonym: Keratan Sulfate Proteoglycan Osteomodulin,Kspg Ost Osteoadherin,Osad; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Omd, Slrr2c, Unq190pro216 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
symmetry	Space Group: P 1 21 1	R_factor 0.217 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.640 110.700 122.150 90.00 106.97 90.00
method	X-Ray Diffraction	resolution	2.17 Å
ligand	NAG, PO4	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Molecular basis for governing the morphology of type-I collagen fibrils by Osteomodulin., Tashima T, Nagatoishi S, Caaveiro JMM, Nakakido M, Sagara H, Kusano-Arai O, Iwanari H, Mimuro H, Hamakubo T, Ohnuma SI, Tsumoto K, Commun Biol. 2018 Apr 19;1:33. doi: 10.1038/s42003-018-0038-2. eCollection 2018. PMID:30271919

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk] Biological Unit Coordinates (5yq5.pdb1.gz) 54 Kb Biological Unit Coordinates (5yq5.pdb2.gz) 54 Kb Biological Unit Coordinates (5yq5.pdb3.gz) 55 Kb Biological Unit Coordinates (5yq5.pdb4.gz) 56 Kb LPC: Ligand-Protein Contacts for 5YQ5 CSU: Contacts of Structural Units for 5YQ5 Structure Factors (4949 Kb) Retrieve 5YQ5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YQ5 from S2C, [Save to disk]

View 5YQ5 in 3D

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Visual 3D analysis of 5YQ5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5yq5_B] [5yq5_A] [5yq5_C] [5yq5_D] SWISS-PROT database: Domain organization of by SWISSPFAM

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