5YRP		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MG, MSE	enzyme
Primary reference	The GDP-switched GAF domain of DcpA modulates the concerted synthesis/hydrolysis of c-di-GMP in Mycobacterium smegmatis., Chen HJ, Li N, Luo Y, Jiang YL, Zhou CZ, Chen Y, Li Q, Biochem J. 2018 Apr 9;475(7):1295-1308. doi: 10.1042/BCJ20180079. PMID:29555845

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (5yrp.pdb1.gz) 68 Kb LPC: Ligand-Protein Contacts for 5YRP CSU: Contacts of Structural Units for 5YRP Structure Factors (438 Kb) Retrieve 5YRP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YRP from S2C, [Save to disk]

View 5YRP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5yrp_A] [5yrp_B] SWISS-PROT database:

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