5Z99 Sugar Binding Protein date Feb 02, 2018
title Crystal Structure Of Sialic Acid Binding Protein From Haemop Ducreyi With Neu5ac
authors R.Subramanian, T.G.Setty
compound source
Molecule: Putative Abc Transporter Periplasmic Binding Prot
Chain: A
Engineered: Yes
 Organism_scientific: Haemophilus Ducreyi 35000hp
Organism_taxid: 233412
Strain: 35000hp Atcc 700724
Gene: Hd_1669
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.169 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.368 89.630 90.787 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.49 Å
ligand SLB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular characterization of the interaction of sialic acid with the periplasmic binding protein from Haemophilus ducreyi., Setty TG, Mowers JC, Hobbs AG, Maiya SP, Syed S, Munson RS Jr, Apicella MA, Subramanian R, J Biol Chem. 2018 Oct 12. pii: RA118.005151. doi: 10.1074/jbc.RA118.005151. PMID:30315109
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (5z99.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 5Z99
  • CSU: Contacts of Structural Units for 5Z99
  • Structure Factors (4058 Kb)
  • Retrieve 5Z99 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Z99 from S2C, [Save to disk]
    • View 5Z99 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Z99
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5z99_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Z99
  • Community annotation for 5Z99 at PDBWiki (http://pdbwiki.org)

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