6ADM Virus date Aug 01, 2018
title Anthrax Toxin Receptor 1-Bound Full Particles Of Seneca Vall In Acidic Conditions
authors Z.Y.Lou, L.Cao
compound source
Molecule: Vp1
Chain: A
 Organism_scientific: Seneca Valley Virus
Organism_taxid: 390157

Molecule: Vp3
Chain: C
Organism_scientific: Seneca Valley Virus
Organism_taxid: 390157

Molecule: Vp2
Chain: B
Organism_scientific: Seneca Valley Virus
Organism_taxid: 390157

Molecule: Vp4
Chain: D
Organism_scientific: Seneca Valley Virus
Organism_taxid: 390157

Molecule: Anthrax Toxin Receptor 1
Chain: R
Synonym: Tumor Endothelial Marker 8
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Antxr1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.84 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, B


D


R


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]
  • Biological Unit Coordinates (6adm.pdb1.gz) 8211 Kb
  • LPC: Ligand-Protein Contacts for 6ADM
  • CSU: Contacts of Structural Units for 6ADM
  • Retrieve 6ADM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ADM from S2C, [Save to disk]
    • View 6ADM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6ADM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6adm_A] [6adm_D] [6adm_B] [6adm_R] [6adm_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6ADM
  • Community annotation for 6ADM at PDBWiki (http://pdbwiki.org)

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