6BDS Transferase date Oct 24, 2017
title Schistosoma Mansoni (Blood Fluke) Sulfotransferasecidd-0000 (Compound 11f) Complex
authors A.B.Taylor
compound source
Molecule: Sulfotransferase Oxamniquine Resistance Protein
Chain: A
Engineered: Yes
 Organism_scientific: Schistosoma Mansoni
Organism_common: Blood Fluke
Organism_taxid: 6183
Gene: Sult-Or, Smp_089320
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pag8h
symmetry Space Group: P 21 21 2
R_factor 0.151 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
140.780 39.541 53.561 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.53 Å
ligand A3P, DJ4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign, Synthesis, and Characterization of Novel Small Molecules as Broad Range Antischistosomal Agents., Rugel A, Tarpley RS, Lopez A, Menard T, Guzman MA, Taylor AB, Cao X, Kovalskyy D, Chevalier FD, Anderson TJC, Hart PJ, LoVerde PT, McHardy SF, ACS Med Chem Lett. 2018 Sep 14;9(10):967-973. doi:, 10.1021/acsmedchemlett.8b00257. eCollection 2018 Oct 11. PMID:30344901
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (6bds.pdb1.gz) 97 Kb
  • Biological Unit Coordinates (6bds.pdb2.gz) 191 Kb
  • LPC: Ligand-Protein Contacts for 6BDS
  • CSU: Contacts of Structural Units for 6BDS
  • Structure Factors (383 Kb)
  • Retrieve 6BDS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BDS from S2C, [Save to disk]
    • View 6BDS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BDS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bds_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BDS
  • Community annotation for 6BDS at PDBWiki (http://pdbwiki.org)

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